Control track and group visibility more selectively below.
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| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| Gap |
| Gap Locations |
| Restr Enzymes |
| Restriction Enzymes from REBASE |
| Short Match |
| Perfect Matches to Short Sequence () |
| FlyBase Het. Boundaries |
| FlyBase Heterochromatin Boundaries |
| Melting Temp. |
| Melting Temperature Estimated by dan |
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| FlyBase R5.50 |
| FlyBase Protein-Coding Genes Release 5.50 |
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| Drosophila Conservation |
| Drosophila Multiz Alignments & phastCons Scores |
| Conserved Elements |
| PhastCons Conserved Elements with Different Parameters |
| D. yakuba Chain |
| D. yakuba (Feb. 2006 (CAF1/DyakWGS)) Chained Alignments |
| D. yakuba Net |
| D. yakuba (Feb. 2006 (CAF1/DyakWGS)) Alignment Net |
| D. erecta Chain |
| D. erecta (Feb. 2006 (CAF1/DereWGS)) Chained Alignments |
| D. erecta Net |
| D. erecta (Feb. 2006 (CAF1/DereWGS)) Alignment Net |
| D. mojavensis Chain |
| D. mojavensis (Apr. 2014 (GEP/DmojImproved)) Chained Alignments |
| D. mojavensis Net |
| D. mojavensis (Apr. 2014 (GEP/DmojImproved)) Alignment Net |
| D. virilis Chain |
| D. virilis (Feb. 2006 (CAF1/DvirWGS)) Chained Alignments |
| D. virilis Net |
| D. virilis (Feb. 2006 (CAF1/DvirWGS)) Alignment Net |
| D. grimshawi Chain |
| D. grimshawi (Apr. 2014 (GEP/DgriImproved)) Chained Alignments |
| D. grimshawi Net |
| D. grimshawi (Apr. 2014 (GEP/DgriImproved)) Alignment Net |
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| Annotated Transposons |
| Transposons Annotation by FlyBase |
| Alignment Coverage |
| Alignment Coverage of Genome Against Itself |
| RepBase Repeats |
| RepeatMasker using RepBase Drosophila Repeat Library |
| Combined Repeats |
| RepeatMasker using Combined Custom Repeat Libraries |
| BLASTN | RECON | MAP Repeats |
| RepeatMasker using BLASTN | RECON | MAP Repeat Library |
| ReAS Repeats |
| RepeatMasker using ReAS Repeat Library |
| RepeatModeler Classified |
| RepeatMasker using Classified RepeatModeler Repeat Library |
| RepeatModeler |
| RepeatMasker using Original RepeatModeler Repeat Library |
| DCBLAST | Grouper | MAP Repeats |
| RepeatMasker using DCBLAST | Grouper | MAP Repeat Library |
| PALS | PILER-DF | MUSCLE Repeats |
| RepeatMasker using PALS | PILER-DF | MUSCLE Repeat Library |
| Tallymer | CD-HIT Repeats |
| RepeatMasker using Tallymer | CD-HIT Repeat Library |
| Repeat Density |
| Repeat Density (1kb window, 0.5kb overlap) |
| WindowMasker |
| Repetitive Regions Identified by WindowMasker |
| TANTAN |
| Simple Repeats Identified by TANTAN |
| TRF Density |
| Tandem Repeats Density (1kb window, 0.5kb overlap) |
| RepeatMasker |
| Repeating Elements by RepeatMasker |
| Simple Repeats |
| Simple Tandem Repeats by TRF |
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