FLNC Iso-Seq Reads Track Settings
 
Alignments of Full-Length Non-Chimeric (FLNC) Iso-Seq Reads   (All PacBio Iso-Seq Tracks)

Display mode:   

Display read names
Minimum alignment quality:

Color track by bases: Help on base coloring

Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query
Draw a vertical green line where query has a polyA tail insertion

Additional coloring modes:
Color by strand (blue for +, red for -)
Use gray for
Use R,G,B colors specified in user-defined tag
No additional coloring

Display data as a density graph:

BAM configuration help

View table schema

Description

This track shows the alignments of D. ananassae Full-Length Non-Chimeric (FLNC) PacBio Iso-Seq reads against the D. ananassae DanaRefSeq2 genome assembly. The alignments were produced using the pbmm2 wrapper for minimap2.

The PacBio Iso-Seq data were produced by Chinmay P. Rele from the Reed Lab at The University of Alabama.

References

Li H. New strategies to improve minimap2 alignment accuracy. Bioinformatics. 2021 Oct 8;37(23):4572-4.