S2 Zhou 30-state (R5) Track Settings
 
30-state Model for S2 Cells Created by Zhou and Troyanskaya (R5)   (All Chromatin Domains tracks)

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Data last updated at UCSC: 2020-08-10

Description

This track shows the 30-state chromatin model for Drosophila S2-DRSC cells created by Zhou and Troyanskaya, 2016.

The colors correspond to the different states in the 30-state model (see the Supplementary Information document for details):

StateDescriptionAcronymColor
01Long Intron1I1
02Long Intron2I2
03Long Intron3I3
04Long Intron4 / Weak Enhancer1I4/WE1
05Weak Enhancer2WE2
06Weak Enhancer3WE3
07Strong Enhancer3SE3
08Strong Enhancer2SE2
09Strong Enhancer1SE1
10TSS1TSS1
11TSS2TSS2
12TSS3TSS3
13TSS4TSS4
14TSS5TSS5
15Gene Start1GS1
16Gene Start2GS2
17Gene Start3GS3
18Gene Start4GS4
19Gene Start5GS5
20Gene Start DCC1GSX1
21Gene Start DCC2GSX2
22Gene End1GE1
23Gene End DCC1GEX1
24Gene End DCC2GEX2
25Gene End2GE2
26Gene End3GE3
27Heterochromatin1HET1
28Heterochromatin2HET2
29GroundG
30Polycomb RepressedPC

Credits

The datasets were retrieved from Supplementary Data 1 for the manuscript by Zhou and Troyanskaya, 2016.

Zhou J, Troyanskaya OG. Probabilistic modelling of chromatin code landscape reveals functional diversity of enhancer-like chromatin states. Nat Commun. 2016 Feb 4;7:10528.