Control track and group visibility more selectively below.
|
Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
All Gaps |
| All gaps of unknown nucleotides (N's), including AGP annotated gaps |
Assembly |
| Assembly |
Gap (AGP defined) |
| AGP gap |
GC Percent |
| GC Percent in 5-Base Windows |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
Tandem Dups |
| Paired identical sequences |
|
|
NCBI RefSeq |
| RefSeq gene predictions from NCBI |
Augustus |
| Augustus Gene Predictions |
|
|
RefSeq mRNAs |
| RefSeq mRNAs mapped to this assembly |
|
|
CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
|
|
RepeatMasker |
| RepeatMasker Repetitive Elements |
Simple Repeats |
| Simple Tandem Repeats by TRF |
WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
|