Control track and group visibility more selectively below.
|
Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
Assembly |
| Assembly |
Gap |
| Gap |
GC Percent |
| GC Percent in 5-Base Windows |
Chromosome Band |
| Ideogram |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
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Ensembl genes |
| Ensembl genes from Arabidopsis_thaliana.TAIR10.18.gtf.gz |
Genscan Genes |
| Genscan Gene Predictions |
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CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
|
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lastz braRap1 |
| lastz chain to braRap1 |
blat braRap1 |
| lift-over blat to braRap1 |
blat ricCom1 |
| lift-over blat to ricCom1 |
|
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RepeatMasker |
| Repeating Elements by RepeatMasker |
WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
Simple Repeats |
| Simple Tandem Repeats by TRF |
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